A catalogue of long read sequencing data analysis tools

Name Platform DOIs Pub Dates Citations Source Description License Technologies in Focus Underlying Algorithms Underlying Assumptions Strengths and Weaknesses Overall Performance Categories Alignment Analysis Pipelines Availablity of Test Data Base Calling Base Modification Detection Demultiplexing De-novo Assembly Error Correction and Polishing Evaluating Exisiting Methods fast5 File Management and Processing Expression Analysis Gap Filling Generating Consensus Sequence Isoform Detection Long Read Overlapping Metagenomics Normalisation polyA Length Estimation Provide Summary Statistics Quality Checking Quality Filtering Quality Trimming Read Quantification RNA Structure Simulators Simulators SNP and Variant Analysis Suitable for Single-cell Experiments Taxonomic Classification Tested on Human Data Tested on Non-Human Data Visualisation